A C F G M P Q R S T 

M

main(String[]) - Static method in class Main_CreateListWithParams_SINGLE
 
Main_CreateListWithParams_SINGLE - Class in <Unnamed>
Create a file with parameters calculated for single protein.
Main_CreateListWithParams_SINGLE() - Constructor for class Main_CreateListWithParams_SINGLE
 
mSAQualityFromHHRfileCheck(String) - Method in class ParamAnalysis
Check e-values, p-values, and score of sequences in the MSA hhr file (pValAve, eValAve, scoreAve).
mSASeqNumberCheck(String, String, boolean) - Method in class ParamAnalysis
Check number of sequences in the MSA file and calculates some scores (mSASeqNmb, ourScoreZscore, gapArea, gapBlockSizeAve).
mSASeqNumberCheck_AligFragment(String, String, List<Integer>, boolean) - Method in class ParamAnalysis
Check number of sequences in the MSA file and calculates some scores (mSASeqNmb, ourScoreZscore, gapArea, gapBlockSizeAve).
A C F G M P Q R S T