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G
gatherSortedGplmdca(String, int, int, int, String)
- Method in class
TopMethods
gatherSortedGplmdca(String)
- Method in class
TopMethods
gatherSortedGplmdcaFinal(String, int, int, int, String)
- Method in class
TopMethods
gdcaSortInd
- Variable in class
TopMethods
gdcaSortVal
- Variable in class
TopMethods
getAlignment()
- Method in class
MSAanalysis
Get alignment in the integer format.
getFastaSeqs()
- Method in class
FastaFileReader
Get fasta sequences.
getFastaTitles()
- Method in class
FastaFileReader
Get fasta sequences' titles.
getFragsForPredicted(String, String, int, List<int[]>, List<String>, String, List<Character>)
- Static method in class
Filters
getFragsForPredicted(String, String, int, List<int[]>, List<String>, String, List<Character>)
- Static method in class
InterSecondary
getFragsForPredicted(String, String, int, List<int[]>, List<String>, String, List<Character>)
- Static method in class
IntraSecondary
getFragsForPredicted(String, String, int, List<int[]>, List<String>, String, List<Character>)
- Static method in class
SecondaryStraddling
getFullText()
- Method in class
ReadFile
getGdcaSortInd()
- Method in class
TopMethods
getGdcaSortVal()
- Method in class
TopMethods
getIndex()
- Method in class
QS_double
getNmbOfContacts(int, int, int, int, int, int, boolean, List<Character>)
- Static method in class
Filters
getNmbOfContacts(int, int, int, int, int, int)
- Static method in class
Terminus
getPosDca1()
- Method in class
TopMethods
getPosDca2()
- Method in class
TopMethods
getQSciag()
- Method in class
QS_double
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