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S

ScratchReader - Class in <Unnamed>
Parse SCRATCH .ss and .acc20 files.
ScratchReader() - Constructor for class ScratchReader
 
SecondaryStraddling - Class in <Unnamed>
Run secondary structure straddling filter and create report of filtered-out contacts.
SecondaryStraddling() - Constructor for class SecondaryStraddling
 
shannonEntropyCalc(int, boolean) - Method in class MSAanalysis
Calculate Shannon Entropy.
shannonEntropyCalc(int, boolean, boolean) - Method in class MSAanalysis
Calculate Shannon Entropy.
sort(int, int) - Method in class QS_double
 
ssRead(String, String) - Static method in class ScratchReader
Read SSpro result for chosen protein in file with results
swap(int, int) - Method in class QS_double
 
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