public class FastaFileReader
extends java.lang.Object
Modifier and Type | Field and Description |
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private java.util.List<java.lang.String> |
fastaSeqs |
private java.util.List<java.lang.String> |
fastaTitles |
Constructor and Description |
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FastaFileReader(java.lang.String fastaPath)
Get all sequences from Fasta file.
|
FastaFileReader(java.lang.String fastaPath,
int howMany)
Get top sequences from Fasta file.
|
Modifier and Type | Method and Description |
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java.util.List<java.lang.String> |
getFastaSeqs()
Get fasta sequences.
|
java.util.List<java.lang.String> |
getFastaTitles()
Get fasta sequences' titles.
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private java.util.List<java.lang.String> fastaSeqs
private java.util.List<java.lang.String> fastaTitles
FastaFileReader(java.lang.String fastaPath, int howMany)
fastaPath
- - path to the fasta filehowMany
- - how many first sequences to get from fasta fileFastaFileReader(java.lang.String fastaPath)
fastaPath
- - path to the fasta file