Class | Description |
---|---|
BuriedExposed |
Run buried-exposed filter and create report of filtered-out contacts.
|
FastaFileReader | |
Filters |
Run filtering and create report of filtered-out contacts.
|
FrequentGaps |
Run frequent gap filter and create report of filtered-out contacts.
|
HighlyConserved |
Run highly conserved filter and create report of filtered-out contacts.
|
InterSecondary |
Run inter-secondary structure filter and create report of filtered-out contacts.
|
InterTerminus |
Run inter-terminus filter and create report of filtered-out contacts.
|
IntraSecondary |
Run intra-secondary structure filter and create report of filtered-out contacts.
|
LowEntropy |
Run low entropy filter and create report of filtered-out contacts.
|
MSAanalysis |
Calculates some MSA characteristics for positions, e.g.
|
NonStrongestCysCys |
Run the non-strongest Cys-Cys filter and create report of filtered-out contacts.
|
QS_double |
Quick-sort.
|
ReadFile | |
ScratchReader |
Parse SCRATCH .ss and .acc20 files.
|
SecondaryStraddling |
Run secondary structure straddling filter and create report of filtered-out contacts.
|
Terminus |
Run terminus filter and create report of filtered-out contacts.
|
TopMethods |
Sort DCA results and provide sorted values and their indexes.
|