private static boolean |
Filters.ifConservMarksPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
java.lang.String aa1,
java.lang.String aa2,
boolean ifConservGaps) |
private static boolean |
HighlyConserved.ifConservMarksPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
java.lang.String aa1,
java.lang.String aa2,
boolean ifConservGaps) |
private static boolean |
Filters.ifEntropyPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
double entCutoff,
boolean ifBoth,
boolean ifGaps) |
private static boolean |
LowEntropy.ifEntropyPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
double entCutoff,
boolean ifBoth,
boolean ifGaps) |
private static boolean |
FrequentGaps.ifGapsFreqPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
boolean ifBothGapsFreq,
double gapFreq) |
private static boolean |
Filters.ifGapsFreqPass(MSAanalysis msaAnalysis,
int pos1,
int pos2,
boolean ifBothGapsFreq,
double gapFreq) |