public class TopMethods
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
private int[] |
gdcaSortInd |
private double[] |
gdcaSortVal |
private java.util.List<java.lang.Integer> |
posDca1 |
private java.util.List<java.lang.Integer> |
posDca2 |
Constructor and Description |
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TopMethods() |
Modifier and Type | Method and Description |
---|---|
void |
gatherSortedGplmdca(java.lang.String folderPath) |
void |
gatherSortedGplmdca(java.lang.String folderPath,
int pos1Col,
int pos2Col,
int dcaCol,
java.lang.String splitRegex) |
private void |
gatherSortedGplmdcaFinal(java.lang.String folderPath,
int pos1Col,
int pos2Col,
int dcaCol,
java.lang.String splitRegex) |
int[] |
getGdcaSortInd() |
double[] |
getGdcaSortVal() |
java.util.List<java.lang.Integer> |
getPosDca1() |
java.util.List<java.lang.Integer> |
getPosDca2() |
private java.util.List<java.lang.Integer> posDca1
private java.util.List<java.lang.Integer> posDca2
private int[] gdcaSortInd
private double[] gdcaSortVal
public void gatherSortedGplmdca(java.lang.String folderPath, int pos1Col, int pos2Col, int dcaCol, java.lang.String splitRegex)
folderPath
- - path to the file with DCA resultspos1Col
- - column with position of the first residue in pair (starting from 0)pos2Col
- - column with position of the second residue in pair (starting from 0)dcaCol
- - column with the DCA scoresplitRegex
- - regex separating a row of results in columnspublic void gatherSortedGplmdca(java.lang.String folderPath)
private void gatherSortedGplmdcaFinal(java.lang.String folderPath, int pos1Col, int pos2Col, int dcaCol, java.lang.String splitRegex)
public java.util.List<java.lang.Integer> getPosDca1()
public java.util.List<java.lang.Integer> getPosDca2()
public int[] getGdcaSortInd()
public double[] getGdcaSortVal()