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C

checkIfFound(List<String>, String) - Static method in class Filters
 
checkIfFound(List<String>, String) - Static method in class NonStrongestCysCys
 
checkIfNonDeletion(int, double) - Method in class MSAanalysis
Check if there is deletion or unknown amino acid frequency higher than the cutoff at the chosen position in MSA.
createReport(String, int, int, String, String, List<String>, double, double) - Static method in class BuriedExposed
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, String, String, String, int, int, String, List<String>, boolean, boolean, int, int, int, boolean, boolean, boolean, int, boolean, boolean, double, boolean, String, boolean, boolean, double, boolean, boolean, boolean, boolean, boolean, double, boolean, boolean, double, boolean, double, double) - Static method in class Filters
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, List<String>, String, boolean, double) - Static method in class FrequentGaps
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, String, List<String>, boolean) - Static method in class HighlyConserved
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, String, String, int, List<String>, int, int, int) - Static method in class InterSecondary
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, List<String>, double) - Static method in class InterTerminus
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, String, String, int, int, String, List<String>) - Static method in class IntraSecondary
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, List<String>, boolean, double, boolean, String) - Static method in class LowEntropy
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, List<String>) - Static method in class NonStrongestCysCys
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, int, String, String, String, List<String>) - Static method in class SecondaryStraddling
Run filtering and create report of filtered-out contacts.
createReport(String, int, int, String, String, List<String>, int, boolean, boolean, double) - Static method in class Terminus
Run filtering and create report of filtered-out contacts.
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