- checkIfFound(List<String>, String) - Static method in class Filters
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- checkIfFound(List<String>, String) - Static method in class NonStrongestCysCys
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- checkIfNonDeletion(int, double) - Method in class MSAanalysis
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Check if there is deletion or unknown amino acid frequency higher than the cutoff at the chosen position in MSA.
- createReport(String, int, int, String, String, List<String>, double, double) - Static method in class BuriedExposed
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, String, String, String, int, int, String, List<String>, boolean, boolean, int, int, int, boolean, boolean, boolean, int, boolean, boolean, double, boolean, String, boolean, boolean, double, boolean, boolean, boolean, boolean, boolean, double, boolean, boolean, double, boolean, double, double) - Static method in class Filters
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, List<String>, String, boolean, double) - Static method in class FrequentGaps
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, String, List<String>, boolean) - Static method in class HighlyConserved
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, String, String, int, List<String>, int, int, int) - Static method in class InterSecondary
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, List<String>, double) - Static method in class InterTerminus
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, String, String, int, int, String, List<String>) - Static method in class IntraSecondary
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, List<String>, boolean, double, boolean, String) - Static method in class LowEntropy
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, List<String>) - Static method in class NonStrongestCysCys
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, int, String, String, String, List<String>) - Static method in class SecondaryStraddling
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Run filtering and create report of filtered-out contacts.
- createReport(String, int, int, String, String, List<String>, int, boolean, boolean, double) - Static method in class Terminus
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Run filtering and create report of filtered-out contacts.