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DCA vs. Misfolds
Introduction
This page includes information about our studies on DCA ability to select the better structure from among properly folded and misfolded variants. The studies were published in article with reference given in the
How to cite section below.
Download
obsolete.dat - list of all PDB obsolete structures and their successors available in PDB (downloaded from here )
superseded - list of all PDB obsolete structures from obsolete.dat file which have been superseded together with their latest successors
not_superseded - list of all PDB obsolete structures from obsolete.dat file which have not been superseded
decoys.csv - list of all native-decoy structure pairs from Decoys 'R' Us database used in our studies
Xray.csv - list of all obsolete-successor structure pairs from PDB determined with X-ray crystallography used in our studies (available also in article's Supplementary Materials)
NMR.csv - list of all obsolete-successor structure pairs from PDB determined with NMR spectroscopy used in our studies (available also in article's Supplementary Materials)
Decoys.zip - all data used in our studies about native-decoy structure pairs from Decoys 'R' Us database (e.g. MSA , raw gplmDCA results, information about residue pairs predicted as contacts)
Xray_superseded.zip - all data used in our studies about obsolete-successor structure pairs from PDB determined with X-ray crystallography and in which obsolete structure was officially superseded in PDB (e.g. MSA , raw gplmDCA results, information about residue pairs predicted as contacts)
NMR_superseded.zip - all data used in our studies about obsolete-successor structure pairs from PDB determined with NMR spectroscopy and in which obsolete structure was officially superseded in PDB (e.g. MSA , raw gplmDCA results, information about residue pairs predicted as contacts)
Not_superseded.zip - all data used in our studies about obsolete-successor structure pairs from PDB in which obsolete structure was not superseded in PDB so it was found with BLAST (e.g. MSA , raw gplmDCA results, information about residue pairs predicted as contacts)
How to cite
If you used our data please cite:
Wozniak PP, Vriend G, Kotulska M,
Correlated mutations select misfolded from properly folded proteins ,
Bioinformatics , 2017 Jan 17, doi:10.1093/bioinformatics/btx013
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