#!/bin/bash
#The script concatenates chains that are described by a text patern given in $1 and writes it to standard output.
#Every special character like "*", "[" "]" should be preceded by a "\" sign.

#USAGE:
#pdb_cat_chains <pattern>
#EXAMPLE:
#./pdb_cat_chains \*\[ABC\]_SAB.pdb > tmp

pdb_cat_chains_awk=/home/bob/Contacts2Struct/c2s_pipeline_src/pdb_cat_chains.awk #SET THE PROPER PATH HERE!!
pattern=$1
cat $pattern | awk -f ${pdb_cat_chains_awk}
echo "END"

